 | Study programme 2019-2020 | Français | |
| Algorithms and Bioinformatics | |||
Learning Activity |
| Code | Lecturer(s) | Associate Lecturer(s) | Subsitute Lecturer(s) et other(s) | Establishment |
|---|---|---|---|---|
| S-INFO-022 |
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| Language of instruction | Language of assessment | HT(*) | HTPE(*) | HTPS(*) | HR(*) | HD(*) | Term |
|---|---|---|---|---|---|---|---|
| Français | Français | 15 | 0 | 30 | 0 | 0 | Q1 |
| Organisational online arrangements for the end of Q3 2019-2020 assessments (Covid-19) |
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| Description of the modifications to the Q3 2019-2020 online assessment procedures (Covid-19) |
| Oral distance exam via Teams for the theoretical part and project to be submitted by 8/10/2020 which will be defended orally via Teams the same day as the exam on the theoretical part. For the exam on the theoretical part, the student choose a question at random, then has his written course notes to prepare the exam for 15 min. He then answers the question, the teacher asking him sub-questions in connection with the main question to assess his mastery of the subject. The defense of the project consists of questions and justifications relating to the work submitted, it takes place in the presence of the course holder and the course assistant. |
Content of Learning Activity
Algorithms, complexity of algorithms, strings, string-matching, sequence alignment; suffix tree; DNA sequencing and fragment assembly
Required Reading
Note de cours - Algorithmique et Bioinformatigue : String Matching - Olivier Delgrange
Required Learning Resources/Tools
Not applicable
Recommended Reading
Note de cours - Complément - Recherche de motifs et ressemblances entre séquences : algorithmes et structures de données - Olivier Delgrange
Recommended Learning Resources/Tools
Not applicable
Other Recommended Reading
- Introduction to Computational Molecular Biology
J. Setubal, J. Meidanis
PWS Publishing Company, 1997
- Algorithmic Aspects of Bioinformatics
HJ Böckenhauer - D. Bongartz
Springer, 2007
Mode of delivery
- Face to face
Type of Teaching Activity/Activities
- Cours magistraux
- Conférences
- Préparations, travaux, recherches d'information
Evaluations
The assessment methods of the Learning Activity (AA) are specified in the course description of the corresponding Educational Component (UE)